{
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  "Package": "mixpower",
  "Title": "Simulation-Based Power Analysis for Mixed-Effects Models",
  "Version": "1.2.0",
  "Authors@R": "person(\"Alex\", \"Litovchenko\", role = c(\"aut\", \"cre\"), email = \"al4877@columbia.edu\")",
  "Description": "A comprehensive, simulation-based toolkit for power and\nsample-size analysis for linear and generalized linear\nmixed-effects models (LMMs and GLMMs). Supports Gaussian,\nbinomial, Poisson, and negative binomial families via 'lme4';\nWald and likelihood-ratio tests; multi-parameter sensitivity\ngrids; power curves and minimum sample-size solvers; parallel\nevaluation with deterministic seeds; and full reproducibility\n(manifests, result bundling, and export to CSV/JSON). Delivers\nthorough diagnostics per run (failure rate, singular-fit rate,\neffective N) and publication-ready summary tables. References:\nBates et al. (2015) \"Fitting Linear Mixed-Effects Models Using\nlme4\" <doi:10.18637/jss.v067.i01>; Green and MacLeod (2016)\n\"SIMR: an R package for power analysis of generalized linear\nmixed models by simulation\" <doi:10.1111/2041-210X.12504>.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "Language": "en-US",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.3",
  "VignetteBuilder": "knitr",
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  "URL": "https://github.com/alitovchenko/mixpower,\nhttps://CRAN.R-project.org/package=mixpower",
  "BugReports": "https://github.com/alitovchenko/mixpower/issues",
  "Config/pak/sysreqs": "cmake make",
  "Repository": "https://alitovchenko.r-universe.dev",
  "Date/Publication": "2026-06-27 18:17:19 UTC",
  "RemoteUrl": "https://github.com/alitovchenko/mixpower",
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  "Packaged": {
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    "User": "root"
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  "Author": "Alex Litovchenko [aut, cre]",
  "Maintainer": "Alex Litovchenko <al4877@columbia.edu>",
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  "_created": "2026-10-07T08:59:04.000Z",
  "_published": "2026-10-07T10:19:05.478Z",
  "_buildurl": "https://github.com/r-universe/alitovchenko/actions/runs/37595001375",
  "_status": "success",
  "_host": "GitHub-Actions",
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    "id": "afdfbd3feea58d94665a84ecd9c9238da1736767",
    "author": "Alexander Litovchenko <alexanderlitovchenko@Mac.lan>",
    "committer": "Alexander Litovchenko <alexanderlitovchenko@Mac.lan>",
    "message": "Finish N4: custom data-generating functions (mp_custom_dgp)\n\nAdd mp_custom_dgp(): wraps a user-supplied data-generating function as a\nvalidated simulate_fun, and mp_scenario_lme4(simulate=) plugs it in while\nkeeping the lme4 fit/test. Designs the built-in grammar does not cover\nnatively -- partially nested designs, multi-arm factors, nonlinear time,\ncorrelated predictors -- now run through the full power / calibrate /\ncompare / report pipeline. Output is validated against the model formula's\nvariables.\n\nTests: validation, simulate= override + reproducibility, calibration\ncomposition, and worked multi-arm (omnibus LRT) + correlated-predictor\nexamples (448 pass, 0 fail).\n",
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  "_maintainer": {
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  "_exports": [
    "fit_model",
    "mp_assumptions",
    "mp_attach_calibration",
    "mp_backend",
    "mp_backend_glmmtmb",
    "mp_backend_lme4",
    "mp_backend_lme4_binomial",
    "mp_backend_lme4_nb",
    "mp_backend_lme4_poisson",
    "mp_beta_to_d",
    "mp_beta_to_r2",
    "mp_bundle_results",
    "mp_calibrate",
    "mp_compare_models",
    "mp_custom_dgp",
    "mp_d_to_beta",
    "mp_design",
    "mp_elicit",
    "mp_extend",
    "mp_f_to_beta",
    "mp_from_fit",
    "mp_grid_sample_size",
    "mp_icc_to_sd",
    "mp_logodds_to_or",
    "mp_manifest",
    "mp_methods_text",
    "mp_missing",
    "mp_or_to_logodds",
    "mp_parallel_cluster",
    "mp_plan",
    "mp_power",
    "mp_power_adaptive",
    "mp_power_checkpoint",
    "mp_power_curve",
    "mp_power_curve_parallel",
    "mp_quick_power",
    "mp_r2_to_beta",
    "mp_recommend_method",
    "mp_report",
    "mp_report_table",
    "mp_safeguard_effect",
    "mp_scenario",
    "mp_scenario_glmmtmb_lmm",
    "mp_scenario_lme4",
    "mp_scenario_lme4_binomial",
    "mp_scenario_lme4_nb",
    "mp_scenario_lme4_poisson",
    "mp_sd_to_icc",
    "mp_sensitivity",
    "mp_sensitivity_cell_run",
    "mp_sensitivity_parallel",
    "mp_sesoi",
    "mp_solve_sample_size",
    "mp_stop",
    "mp_t_to_beta",
    "mp_write_report",
    "mp_write_results",
    "plot_power",
    "run_parallel",
    "simulate_glmm_binomial_data",
    "simulate_glmm_nb_data",
    "simulate_glmm_poisson_data",
    "simulate_power",
    "summarize_simulations",
    "test_effect",
    "validate_mp_backend"
  ],
  "_help": [
    {
      "page": "mixpower-package",
      "title": "Simulation-Based Power Analysis for Mixed-Effects Models",
      "topics": [
        "mixpower-package",
        "mixpower"
      ]
    },
    {
      "page": "as_tibble.mp_power",
      "title": "Coerce mixpower results to a tibble",
      "topics": [
        "as_tibble.mp_power"
      ]
    },
    {
      "page": "autoplot.mp_sensitivity",
      "title": "ggplot2 diagnostic plot for sensitivity or power curve",
      "topics": [
        "autoplot.mp_sensitivity"
      ]
    },
    {
      "page": "effect_size",
      "title": "Effect-size converters for eliciting assumptions",
      "topics": [
        "effect_size",
        "mp_beta_to_d",
        "mp_beta_to_r2",
        "mp_d_to_beta",
        "mp_f_to_beta",
        "mp_icc_to_sd",
        "mp_logodds_to_or",
        "mp_or_to_logodds",
        "mp_r2_to_beta",
        "mp_sd_to_icc",
        "mp_t_to_beta"
      ]
    },
    {
      "page": "fit_model",
      "title": "Fit a model for a single simulated dataset",
      "topics": [
        "fit_model"
      ]
    },
    {
      "page": "mp_assumptions",
      "title": "Create modeling assumptions for simulation-based power",
      "topics": [
        "mp_assumptions"
      ]
    },
    {
      "page": "mp_attach_calibration",
      "title": "Record a calibration result on a scenario",
      "topics": [
        "mp_attach_calibration"
      ]
    },
    {
      "page": "mp_backend",
      "title": "MixPower backend contract",
      "topics": [
        "mp_backend"
      ]
    },
    {
      "page": "mp_backend_glmmtmb",
      "title": "Build a glmmTMB backend for Gaussian LMM scenarios",
      "topics": [
        "mp_backend_glmmtmb"
      ]
    },
    {
      "page": "mp_backend_lme4",
      "title": "Build an lme4 backend for MixPower scenarios",
      "topics": [
        "mp_backend_lme4"
      ]
    },
    {
      "page": "mp_backend_lme4_binomial",
      "title": "Build an lme4 backend for binomial GLMM scenarios",
      "topics": [
        "mp_backend_lme4_binomial"
      ]
    },
    {
      "page": "mp_backend_lme4_nb",
      "title": "Build an lme4 backend for Negative Binomial GLMM scenarios",
      "topics": [
        "mp_backend_lme4_nb"
      ]
    },
    {
      "page": "mp_backend_lme4_poisson",
      "title": "Build an lme4 backend for Poisson GLMM scenarios",
      "topics": [
        "mp_backend_lme4_poisson"
      ]
    },
    {
      "page": "mp_bundle_results",
      "title": "Bundle results with manifest and optional labels",
      "topics": [
        "mp_bundle_results"
      ]
    },
    {
      "page": "mp_calibrate",
      "title": "Check the Type I error calibration of a scenario's test",
      "topics": [
        "mp_calibrate"
      ]
    },
    {
      "page": "mp_compare_models",
      "title": "Compare analysis models on the same data: power _and_ Type I error",
      "topics": [
        "mp_compare_models"
      ]
    },
    {
      "page": "mp_custom_dgp",
      "title": "Plug a custom data-generating function into the mixpower pipeline",
      "topics": [
        "mp_custom_dgp"
      ]
    },
    {
      "page": "mp_design",
      "title": "Create a study design specification",
      "topics": [
        "mp_design"
      ]
    },
    {
      "page": "mp_elicit",
      "title": "Elicit assumptions from standardized scientific quantities",
      "topics": [
        "mp_elicit"
      ]
    },
    {
      "page": "mp_extend",
      "title": "Scale a fitted-model scenario's sample size up or down",
      "topics": [
        "mp_extend"
      ]
    },
    {
      "page": "mp_from_fit",
      "title": "Build a power scenario from a fitted lme4 model",
      "topics": [
        "mp_from_fit"
      ]
    },
    {
      "page": "mp_grid_sample_size",
      "title": "Create a grid of values for sample-size search",
      "topics": [
        "mp_grid_sample_size"
      ]
    },
    {
      "page": "mp_manifest",
      "title": "Reproducibility manifest for power analyses",
      "topics": [
        "mp_manifest"
      ]
    },
    {
      "page": "mp_methods_text",
      "title": "Generate a methods paragraph for a power analysis",
      "topics": [
        "mp_methods_text"
      ]
    },
    {
      "page": "mp_missing",
      "title": "Add a missing-data / dropout mechanism to a scenario",
      "topics": [
        "mp_missing"
      ]
    },
    {
      "page": "mp_plan",
      "title": "Plan power the calibrate-first way",
      "topics": [
        "mp_plan"
      ]
    },
    {
      "page": "mp_power",
      "title": "Simulation-based power estimation (engine-agnostic core)",
      "topics": [
        "mp_power"
      ]
    },
    {
      "page": "mp_power_adaptive",
      "title": "Adaptive (sequential) power simulation",
      "topics": [
        "mp_power_adaptive"
      ]
    },
    {
      "page": "mp_power_checkpoint",
      "title": "Resumable, checkpointed power simulation",
      "topics": [
        "mp_power_checkpoint"
      ]
    },
    {
      "page": "mp_power_curve",
      "title": "Power curve for a single design/assumption parameter",
      "topics": [
        "mp_power_curve"
      ]
    },
    {
      "page": "mp_power_curve_parallel",
      "title": "Parallel power curve evaluation",
      "topics": [
        "mp_power_curve_parallel"
      ]
    },
    {
      "page": "mp_quick_power",
      "title": "Quick power run for a single LMM design",
      "topics": [
        "mp_quick_power"
      ]
    },
    {
      "page": "mp_recommend_method",
      "title": "Recommend an inference method for a scenario",
      "topics": [
        "mp_recommend_method"
      ]
    },
    {
      "page": "mp_report",
      "title": "Build a full \"trust report\" for a power analysis",
      "topics": [
        "mp_report"
      ]
    },
    {
      "page": "mp_report_table",
      "title": "Publication-ready summary table for power results",
      "topics": [
        "mp_report_table"
      ]
    },
    {
      "page": "mp_safeguard_effect",
      "title": "Safeguard (confidence-bound) effect size from a fitted model",
      "topics": [
        "mp_safeguard_effect"
      ]
    },
    {
      "page": "mp_scenario",
      "title": "Create a power-analysis scenario",
      "topics": [
        "mp_scenario"
      ]
    },
    {
      "page": "mp_scenario_glmmtmb_lmm",
      "title": "Gaussian LMM scenario using glmmTMB",
      "topics": [
        "mp_scenario_glmmtmb_lmm"
      ]
    },
    {
      "page": "mp_scenario_lme4",
      "title": "Create a fully specified MixPower scenario with the lme4 backend",
      "topics": [
        "mp_scenario_lme4"
      ]
    },
    {
      "page": "mp_scenario_lme4_binomial",
      "title": "Create a fully specified MixPower scenario with the binomial lme4 backend",
      "topics": [
        "mp_scenario_lme4_binomial"
      ]
    },
    {
      "page": "mp_scenario_lme4_nb",
      "title": "Create a fully specified MixPower scenario with the NB lme4 backend",
      "topics": [
        "mp_scenario_lme4_nb"
      ]
    },
    {
      "page": "mp_scenario_lme4_poisson",
      "title": "Create a fully specified MixPower scenario with the Poisson lme4 backend",
      "topics": [
        "mp_scenario_lme4_poisson"
      ]
    },
    {
      "page": "mp_sensitivity",
      "title": "Run power sensitivity analysis over a parameter grid",
      "topics": [
        "mp_sensitivity"
      ]
    },
    {
      "page": "mp_sensitivity_parallel",
      "title": "Parallel sensitivity analysis over a parameter grid",
      "topics": [
        "mp_sensitivity_parallel"
      ]
    },
    {
      "page": "mp_sesoi",
      "title": "Set a smallest effect size of interest (SESOI) on a scenario",
      "topics": [
        "mp_sesoi"
      ]
    },
    {
      "page": "mp_solve_sample_size",
      "title": "Solve for minimum sample size achieving target power",
      "topics": [
        "mp_solve_sample_size"
      ]
    },
    {
      "page": "mp_stop",
      "title": "Stopping rule for adaptive power simulation",
      "topics": [
        "mp_stop"
      ]
    },
    {
      "page": "mp_write_report",
      "title": "Write a power-analysis report to a file",
      "topics": [
        "mp_write_report"
      ]
    },
    {
      "page": "mp_write_results",
      "title": "Write results or bundle to CSV or JSON",
      "topics": [
        "mp_write_results"
      ]
    },
    {
      "page": "plot_power",
      "title": "Plot power results",
      "topics": [
        "plot_power"
      ]
    },
    {
      "page": "plot.mp_power",
      "title": "Plot the p-value distribution of a power analysis",
      "topics": [
        "plot.mp_power"
      ]
    },
    {
      "page": "plot.mp_power_curve",
      "title": "Plot a power curve",
      "topics": [
        "plot.mp_power_curve"
      ]
    },
    {
      "page": "plot.mp_sensitivity",
      "title": "Plot a sensitivity analysis",
      "topics": [
        "plot.mp_sensitivity"
      ]
    },
    {
      "page": "run_parallel",
      "title": "Placeholder for parallel execution",
      "topics": [
        "run_parallel"
      ]
    },
    {
      "page": "simulate_glmm_binomial_data",
      "title": "Simulate binary outcome data for a GLMM with random effects",
      "topics": [
        "simulate_glmm_binomial_data"
      ]
    },
    {
      "page": "simulate_glmm_nb_data",
      "title": "Simulate count outcome data for a Negative Binomial GLMM with random effects",
      "topics": [
        "simulate_glmm_nb_data"
      ]
    },
    {
      "page": "simulate_glmm_poisson_data",
      "title": "Simulate count outcome data for a Poisson GLMM with random effects",
      "topics": [
        "simulate_glmm_poisson_data"
      ]
    },
    {
      "page": "simulate_power",
      "title": "Run a simple simulation-based power study",
      "topics": [
        "simulate_power"
      ]
    },
    {
      "page": "summarize_simulations",
      "title": "Summarize simulation outputs",
      "topics": [
        "summarize_simulations"
      ]
    },
    {
      "page": "test_effect",
      "title": "Extract a test statistic for a model term",
      "topics": [
        "test_effect"
      ]
    },
    {
      "page": "validate_mp_backend",
      "title": "Validate a MixPower backend",
      "topics": [
        "validate_mp_backend"
      ]
    }
  ],
  "_readme": "https://github.com/alitovchenko/mixpower/raw/HEAD/README.md",
  "_rundeps": [
    "boot",
    "lattice",
    "lme4",
    "MASS",
    "Matrix",
    "minqa",
    "nlme",
    "nloptr",
    "rbibutils",
    "Rcpp",
    "RcppEigen",
    "Rdpack",
    "reformulas"
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